This Figshare dataset corresponds to the dataset described in the following manuscript:

Manual Delineation approaches for direct imaging of the subcortex
Anneke Alkemade (1), Martijn J. Mulder (2), Anne Trutti (1,3) and Birte Forstmann (1)

1. Department of Psychology, University of Amsterdam, Amsterdam, The Netherlands
2. University of Utrecht, Psychology and Social Sciences, Utrecht, The Netherlands
3. Institute of Psychology, Leiden University, Leiden, The Netherlands

Files included on Figshare are:

sub-1.tar.gz
sub-2.tar.gz
sub-3.tar.gz

amg: amygdala
3V: third ventricle
4V: fourth ventricle
cl: claustrum
fx: fornix
gpe: globus pallidus, external segment
gpi: globus pallidus, internal segment
ic: internal capsule
ico: inferior colliculus
lh: lateral habenula
lv: lateral ventricle
pag: periacqueductal grey
pag: periventricular grey
ppn: pedunculopontine nucleus
rn: red nucleus
scg: subcallosal cingulate gyrus
sco: superior colliculus
sn: substantia nigra
stn: subthalamic nucleus
str: striatum
tha: thalamus
vta: ventral tegmental area


These compressed files each contain an individual series of MRI contrasts as described in the manuscript and individual manual delineations of the structures described in the accompanying manuscripts. These participants were randomly selected from The Amsterdam Ultra-high field adult lifespan database (AHEAD): A freely available multimodal 7 Tesla submillimeter magnetic resonance imaging database, Neuroimage. 2020 Aug 1;221:117200. doi: 10.1016/j.neuroimage.2020.117200. Identifying information was removed before sharing the data in accordance with GDPR regulations. 


Corresponding author:
Anneke Alkemade, PhD
Department of Psychology
University of Amsterdam
Nieuwe Achtergracht 129B | Room G3.08
Postbus 15926 | 1001 NK Amsterdam
jmalkemade@gmail.com

Keywords: ultra-high field 7 Tesla structural MRI, subcortex, probabilistic maps, basal ganglia, manual delineations